"The original plans did not take sufficient account of the compound effect of building a high-speed line through a more densely populated country with more difficult topography than elsewhere – and doing so whilst complying with higher environmental standards," Cook said in his report.
"Equally, the existing cost/benefit model, which was designed for smaller scale schemes, has proved inadequate in capturing the full transformational effect of HS2, particularly on changing land values. This transformation is already being demonstrated in Birmingham," he said.
Last month, transport secretary Grant Shapps announced an independent review of the "affordability, deliverability, benefits, scope and phasing" of HS2, led by former HS2 Ltd non-executive chair Douglas Oakervee, which is expected to report later this autumn.
Shapps said that he was presenting Cook's advice to the UK parliament, making only the necessary commercial redactions, to ensure that MPs "have the full picture" of both the costs and the benefits of the project.
Infrastructure law expert Jon Hart of Pinsent Masons, the law firm behind Out-Law, said that the publication "suggests that a valuable lesson has been learned in terms of being more open and transparent with the public when it comes to infrastructure project delays".
"The discussion around delay recognises the problems that have been experienced in relation to some of the packages for the project, stations, power and systems for infrastructure," he said. "The recommendation in relation to a 'phased opening' is entirely understandable in these circumstances but may require some additional challenging steps to be taken in terms of programming and technical commissioning arrangements."
"While Shapps' announcements confirm that the cost estimates for the project have increased, they do appear to suggest that the project will still be delivered and safeguard the investments that have been made so far, subject to the outcome of the Oakervee Review. There would appear to be some positive noises in relation to the phase 2a extension for the project beyond Birmingham to Crewe, the legislation for which is currently before parliament," he said.
In a statement to parliament, Shapps said that HS2 Ltd would continue its work on Phase One of the project while work progressed on the Oakervee Review. The Phase 2a legislation will continue to progress in the House of Lords.
"This will ensure we are ready to proceed without further delay for the main construction stage of Phase One in the event that the government chooses to continue," he said.